Best Stand Alone Payroll Software

factoHR is a cloud-based Human Capital Management (HCM) and payroll platform built to automate the full employee lifecycle, from hiring and onboarding through attendance, payroll, performance, and exit. It is widely used by small, mid-sized, and enterprise organizations, particularly across India, that want to move HR operations off spreadsheets and into one connected system.

The platform covers core HR, payroll processing with statutory compliance, attendance and leave management, performance reviews, and an employee self-service portal with a mobile app. Managers get real-time dashboards and analytics, while employees can handle payslips, leave requests, and approvals on their own. By centralizing these workflows, factoHR helps HR teams cut manual effort, reduce payroll errors, and keep compliance on track.

greytHR is a cloud-based HRMS and payroll platform serving over 30,000 companies and 3 million-plus users across 25+ countries, including India, the UAE, Saudi Arabia, and Qatar. It covers core HR functions such as attendance, leave, and payroll management alongside performance management, employee engagement, and recruitment tools in a single connected platform.

The platform includes NAVOS, an agentic AI assistant, along with statutory compliance tools and an employee self-service portal for pay slips and personal data. greytHR also offers a broader support ecosystem including a training academy, community forums, a resource library, and a compliance wiki.

Zoho People is a cloud-based HR (Human Resources) management software developed by Zoho Corporation. It is designed to streamline and automate various HR processes, including employee management, attendance tracking, leave management, performance appraisal, and more. Zoho People offers features such as employee self-service portals, customizable forms, reports, and integration with other Zoho products as well as third-party applications. It aims to help businesses manage their HR functions more efficiently, saving time and resources. Read Zoho People Reviews

Zoho Payroll is cloud-based payroll software that automates gross-to-net pay calculations, tax withholding, and compliance filing for small and mid-sized businesses. It supports multiple pay schedules (weekly, bi-weekly, semi-monthly, monthly), handles single-state and multi-state payroll runs, and automatically calculates and files federal and state payroll taxes, generating IRS forms 940, 941, and 944. Employees can enroll in benefits such as health insurance and 401(k) retirement plans, and access a self-service portal to view payslips and tax documents.

The product integrates natively with other Zoho applications including Zoho Books, Zoho People, and Zoho Expense, making it a fit for businesses already using the Zoho ecosystem. It offers a 14-day free trial with no credit card required, tiered pricing based on organization size and number of employees, and role-based access for accountants and HR staff to collaborate on payroll tasks.

CheckMark Payroll is a payroll processing solution offered in two formats: a desktop application for Windows and macOS, and CheckMark Online Payroll, a cloud-based version accessible through a web browser. It is designed for small and medium-sized businesses and for accountants who process payroll on behalf of multiple clients. The software handles payroll calculations, direct deposit via ACH, MICR-encoded check printing, tax form preparation (941, 940, 944, 943, W-2, W-3), and e-filing to the SSA and state agencies. It supports unlimited employees and payroll runs, tracks paid time off, and can import employee hours from spreadsheets or time clocks.

The desktop edition is sold as an annual license with tiered pricing for managing multiple companies, while the online edition is billed monthly on a per-employee basis with a separate Accountant Edition for firms managing several client companies. Both editions include tax table updates, payroll reporting, and export options to accounting programs such as QuickBooks and MultiLedger.

Sage HCM Payroll (formerly Criterion HCM) is a cloud-based payroll module built into Sage's unified HR platform, Sage HCM. It handles complex payroll scenarios including union workers, multi-entity and multi-location operations, and certified or prevailing-wage rates, while automating tax calculation, filing, and payments. The standalone consumer-facing Sage Payroll brand that once served small US businesses directly was sold to iSolved HCM in 2019, and Sage's current live US payroll product now operates under the Sage HCM brand.

The platform shares one cloud database across payroll, HR, and talent engagement modules, and supports mobile employee self-service for time entry and pay history on iOS and Android. It includes geo-coding for automatic tax jurisdiction handling, cost allocation to any general ledger or project account, and 50 plus standard and custom payroll reports. Sage states it serves 650 plus enterprise customers.

Fingercheck is a cloud-based payroll and HR platform designed for small and mid-sized businesses, with a focus on hourly, field, and deskless workforces such as construction, field services, staffing, healthcare, and manufacturing. It combines time and attendance tracking (with geofencing, mobile clock-in, and fraud prevention), payroll processing with automated tax filing and W-2/1099 generation, employee scheduling, hiring and applicant tracking, digital onboarding, and benefits administration into one connected system.

Rippling Payroll is a payroll module within the Rippling workforce management platform, built for companies that want payroll unified with their HR, IT, and finance data. It runs U.S. payroll with automatic federal, state, and local tax calculation, filing, and remittance, and supports paying workers across all 50 states as well as in 185+ countries and 50+ currencies through Rippling's global payroll offering. Because employee data, benefits deductions, and salary changes live in the same system, payroll runs automatically pull in changes without manual re-entry, and admins can run off-cycle payrolls at no extra charge.

Rippling is sold as a modular platform: customers pick a base platform plus the specific modules they need, such as Payroll, Benefits Administration, Time & Attendance, or full HRIS. Exact pricing is only available through a custom quote from Rippling's sales team, and published per-employee rates vary depending on which modules are bundled together, so buyers should request a quote for their specific employee count and module mix.

Saral PayPack is a payroll management software built by Relyonsoft for Indian businesses that need to handle salary processing alongside local statutory compliance. It covers the full payroll cycle from attendance capture through payslip generation, including earnings and deductions setup on a CTC basis, reimbursement management, PF, ESI, bonus and TDS handling, and digital generation of Form 16 and Form 12BA. The software supports biometric and non-biometric attendance devices, leave management, and an Employee Self-Service portal with a mobile app for Android and iOS.

It is available as a one-time licensed desktop application or as a cloud-hosted product called Secufam, with Standard, Corporate, and Premium editions that scale by number of companies and employees supported. The software also offers over 100 standard reports plus custom reporting, bank file formats for salary disbursement, and audit trail reporting for compliance-focused organizations across industries in India.

eNETEmployer is a cloud-based payroll and human resources platform built specifically for Canadian businesses, offered by eNETEmployer (part of the eNETPayroll/CanPay family, serving Canadian employers since 1985). It handles payroll processing for salaried, hourly, and commissioned employees, along with overtime, deductions, benefits, and Canada Revenue Agency (CRA) tax compliance. The platform uses a spreadsheet-style interface that lets administrators edit data in place, reorder columns, and filter records, and it generates Records of Employment (ROE), T4s, and T4As at year end.

Beyond core payroll, eNETEmployer includes HR tools such as timekeeping, scheduling, and attendance tracking, plus an employee self-service portal for viewing pay stubs and updating personal details. Businesses can choose between Self-Service, Partial-Service, or Full-Service payroll tiers, with eNETEmployer's staff handling more of the remittance and processing work at higher tiers. Pricing is pay-per-run and per-employee rather than a flat subscription, with additional fees for CRA remittance, direct deposit (EFT), and third-party remittances such as garnishments or WSIB/WCB.