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Best Payment Processing Software

Payment processing software allows businesses to handle various B2B payment types. Companies use this software to keep track of payments from business customers and suppliers.

More about Payment Processing Software

Main features include:

  • B2B payment handling
  • Support for multiple payment methods
  • Gathering and sending payment info
  • Sending transaction approvals or denials
  • Payment rules and terms you can change
  • Finding and tracking errors
  • Working with financial systems

This software connects with payment gateways, accounting programs, AP automation tools, online shopping platforms, and store checkout systems. Accounting teams use it to ensure they pay on time and avoid mistakes.

To qualify for the Payment Processing software category, a product must:

  • Gather and send customer payment details
  • Send transaction approvals or denials
  • Handle multiple ways to pay
  • Set up and monitor custom payment rules
  • Spot payment mistakes
  • Connect with financial systems

The main benefit is to make B2B payments smoother. It does this by offering a complete system to manage different payment methods, ensure things are correct, and work with other money-related systems.

Payment Processing Software Compared

Compare the 10 most relevant Payment Processing Software options on price, free trial and deployment.

Payment Processing Software comparison: starting price, free trial, free plan, API and deployment
Product Starting price Free trial Free plan API Deployment
Whop Payments The payments stack for modern day businesses $0.30 Any
Amazon Pay Checkout solution letting Amazon customers pay on third-party sites with… 2.9% + $0.30 Cloud Based
Helcim Transparent interchange-plus payment processing with no monthly fees or contracts Not published Cloud Based
Chase Payment Solutions Payment processing, POS, and merchant services from JPMorgan Chase for… 2.6% + 10c Cloud Based
Stax Subscription-based payment processing with zero markup on interchange costs $99 Cloud Based
Stripe Payment infrastructure for accepting cards and payments online, in person,… 2.9% + $0.30/transaction Cloud Based
PayPal Send, receive, and accept payments online, in person, and across… 3.49% + $0.49/transaction Cloud Based
Authorize.Net Payment gateway with virtual terminal, recurring billing, and fraud detection. $25 Cloud Based
Worldpay (FIS) Global payment processing platform, now owned by Global Payments after… Custom Cloud Based, Hybrid
Adyen Unified enterprise payments platform for online, in-store, and mobile commerce. $0.13 Cloud Based

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21 Best Payment Processing Software Options

Showing 1 - 20 of 21 products

The payments stack for modern day businesses

Whop Payments is a specialized payment infrastructure designed to help entrepreneurs, creators, and global enterprises sell digital products, such as courses, communities, software, and livestreams, with maximum efficiency. Functioning as a comprehensive "payments stack," it replaces the need for complex, multi-gateway setups by orchestrating transactions to the providers most likely to accept them. This intelligent routing and retry logic helps businesses increase revenue by an estimated 6-11% by reducing failed payments. Beyond processing, Whop Payments offers a robust merchant ecosystem that includes a no-code store builder, affiliate management, and dispute resolution. It empowers sellers to reach a global audience by accepting over 100 payment methods (including Crypto and Buy Now, Pay Later options) and facilitating payouts in over 240 territories via ACH, Venmo, CashApp, and more. Pricing: Platform Fee: Free to start with no monthly subscription. Transaction Fee: 2.7% + $0.30 per transaction. Read Whop Payments Reviews

Payment processing, POS, and merchant services from JPMorgan Chase for US businesses

Chase Payment Solutions, part of JPMorgan Chase, provides merchant services including credit card processing, point-of-sale systems, and online payment gateways for US businesses. As both a payment processor and the acquiring bank, it can offer faster payouts with fewer intermediaries. Pricing is transaction-based, with tap, dip, or swipe payments at 2.6% plus 10 cents, manually keyed transactions or payment links at 3.5% plus 15 cents, and online orders at 2.9% plus 25 cents, with no long-term contract required.

Businesses using a Chase Business Complete Banking account that process over $2,000 per month in card payments can have monthly service fees waived, and same-day deposits are included at no extra cost. Chase also offers custom pricing for higher-volume merchants and sells a range of card readers and POS terminals separately, along with fraud monitoring, reporting, and analytics tools.

Read Chase Payment Solutions Reviews

Checkout solution letting Amazon customers pay on third-party sites with their Amazon account

Amazon Pay is a checkout service that allows the hundreds of millions of existing Amazon customers to use their stored payment methods and shipping addresses to buy from third-party merchant websites without creating a new account. It charges a straightforward per-transaction fee with no monthly, setup, or termination fees, and rates automatically decrease for merchants with higher monthly processing volume.

Merchants integrate Amazon Pay into their own checkout flow, and premier partners include Shopify and WooCommerce for easier setup. The service includes Amazon's fraud and chargeback protection, and in some markets supports Buy Now Pay Later options. It is well suited to ecommerce businesses of any size that want to reduce checkout friction by leveraging Amazon's trusted brand and stored customer data.

Read Amazon Pay Reviews

Transparent interchange-plus payment processing with no monthly fees or contracts

Helcim is a Canadian payment processing company that provides credit card, debit, and ACH acceptance for in-person, online, and mobile businesses. It uses interchange-plus pricing, meaning merchants pay the wholesale card network rate plus a small transparent markup that automatically decreases as processing volume grows, with no monthly fees, contracts, or PCI compliance fees.

The platform bundles a free point of sale app, online invoicing, recurring billing, a virtual terminal, and payment links at no extra software cost. Helcim also sells its own card readers and smart terminals and supports ACH/EFT payments in the US and Canada. It is aimed mainly at small and medium sized businesses that want predictable, low processing costs without long term commitments.

Read Helcim Reviews

Subscription-based payment processing with zero markup on interchange costs

Stax (formerly Fattmerchant) is a US payment processing company that uses a subscription pricing model instead of taking a percentage markup on every transaction. Merchants pay a flat monthly membership fee based on annual processing volume, plus a small flat fee per swiped or keyed transaction, with no additional markup on the underlying interchange rate.

The platform includes a mobile card reader, virtual terminal, invoicing, recurring billing, reporting, and access to 200+ integrations through Stax Connect. It is best suited to established small and medium businesses processing at least a few thousand dollars a month, since the subscription model becomes more cost-effective at higher volumes.

Read Stax Reviews

Payment infrastructure for accepting cards and payments online, in person, and globally.

Stripe is a payment processing platform that lets businesses accept credit cards, debit cards, and dozens of other payment methods online, in person, and across borders through a single API. It is used by companies ranging from small online stores to large public companies, combining a checkout and billing product suite with tools for fraud prevention, tax calculation, and marketplace payouts.

Beyond core payments, Stripe offers Connect for platforms and marketplaces, Radar for machine learning fraud detection, Terminal for in-person card readers, and Billing for subscription management. Pricing is pay as you go with no monthly fee for standard accounts, and large businesses can negotiate custom volume-based rates.

Read Stripe Reviews

Send, receive, and accept payments online, in person, and across borders.

PayPal is a widely used online payment platform that lets individuals and businesses send and receive money, accept card payments, and manage checkout on websites and mobile apps. A PayPal Business account is free to open with no monthly fee, and merchants pay a percentage plus a fixed fee per transaction depending on how the payment is taken.

PayPal Business supports invoicing, buy-now buttons, subscription billing, Pay Later options for customers, and in-person payments through its Zettle card readers. It also provides seller protection against certain chargebacks and disputes, multi-currency support for international sales, and integrations with major ecommerce platforms such as Shopify and WooCommerce.

Read PayPal Reviews

Payment gateway with virtual terminal, recurring billing, and fraud detection.

Authorize.Net is a payment gateway that lets businesses accept credit cards, debit cards, and eChecks online, over the phone, and in person through a virtual terminal. It is one of the longer-established gateways in the US market and is commonly paired with a separate merchant account or bundled with one through its All-in-One plan.

Authorize.Net charges a flat monthly gateway fee plus per-transaction fees that vary by plan, and offers recurring billing, a Customer Information Manager for storing payment profiles, digital invoicing, and an Advanced Fraud Detection Suite with more than 200 configurable rules. It integrates with many shopping carts and ecommerce platforms and provides 24/7 support.

Read Authorize.Net Reviews

Global payment processing platform, now owned by Global Payments after a 2026 ownership change.

Worldpay is a global payment processing provider that handles card, ACH, mobile, and in-store transactions across more than 140 countries and over 300 local payment methods. It serves small businesses through enterprise merchants with tools for accepting payments, fraud protection, payout and multi-currency management, and embedding payments into software platforms and marketplaces.

As of January 2026, ownership of Worldpay changed: Global Payments completed its acquisition of Worldpay, while FIS sold its stake in Worldpay and instead acquired Global Payments' issuer solutions business. Worldpay no longer publishes standard pricing; rates are quoted per merchant based on volume, industry, and risk, typically using interchange-plus pricing.

Read Worldpay (FIS) Reviews

Unified enterprise payments platform for online, in-store, and mobile commerce.

Adyen is a global payments platform built for large and fast-growing enterprises that need to accept payments across online, in-store, and mobile channels through a single unified system. It supports more than 100 payment methods worldwide, including cards, digital wallets, bank transfers, and buy now pay later options, with local acquiring in dozens of countries.

Adyen uses transparent interchange-plus pricing rather than flat blended rates, charging a small fixed processing fee plus the underlying card scheme costs and its own markup, with no published flat-rate plans. The platform also includes Adyen for Platforms for marketplaces, real-time risk and fraud management, and unified reporting that connects online and in-person sales data.

Read Adyen Reviews

Payment Processing Software Buyer's Guide

Buyers comparing Payment Processing Software usually find the shortlist separates on workflow fit and total cost rather than headline capability. This guide covers what it does, the capabilities worth checking, and how to compare a shortlist.

What is Payment Processing Software?

Payment Processing Software helps teams manage financial processes such as budgeting, costing, billing, forecasting, and financial reporting. In practice the gain is consistency, because everyone works from the same record instead of a personal copy of it. Most products handle the easy cases; the useful test is what happens at the edges of your process.

Key features to look for in Payment Processing Software

Requirements vary, though most credible Payment Processing Software products offer the capabilities below.

  • Budgeting and forecasting models
  • Automated calculations and rules
  • Approval workflows and audit trails
  • Integration with accounting and banking systems
  • Scenario planning and what if analysis
  • Reporting packs and statements
  • Multi currency and tax handling
  • Role based access to sensitive figures

Benefits of using Payment Processing Software

When the match is good, the outcomes people describe are:

  • Less spreadsheet risk and fewer broken formulas
  • Faster month end and reporting cycles
  • Forecasts that update as actuals arrive
  • A clear audit trail for every change
  • Finance time moved from data entry to analysis

Who uses Payment Processing Software?

Payment Processing Software is used by finance teams, controllers, analysts, bookkeepers, and business owners. Company size is a weaker signal than workflow match when judging whether an option suits you.

How to choose the right Payment Processing Software

Worth weighing before you commit to any Payment Processing Software option:

  • Whether it integrates with your accounting system directly
  • How it handles multi currency and local tax rules
  • Approval workflows that match how your business signs things off
  • Audit trail depth if you are regulated or audited
  • How much of your existing spreadsheet logic transfers across

Shortlist two or three and trial each against real work rather than a prepared demo. Involve whoever will use it daily, since day to day usability decides adoption more often than the feature comparison does.

How much does Payment Processing Software cost?

Typically per user each month with tiers based on entities, currencies, or transaction volume. Implementation support is often a separate one off cost. Work out cost at your projected volume, not your current one, and confirm the quoted tier includes what you require.

FAQs of Payment Processing Software

Payment Processing Software covers the operational side of finance work, holding records, scheduling and invoicing together instead of across separate tools.

Generic software leaves you building the finance specifics yourself, whereas Payment Processing Software ships with them at a higher price.

Fit depends on the scale Payment Processing Software was designed for, so check whether the vendor’s typical finance customer resembles your own operation.

Migration support varies across Payment Processing Software, so ask what the vendor imports as standard from your current finance records and what needs manual work.

Payment Processing Software is usually billed per seat or per site each month, and specialist finance tooling generally prices above generic software.

Test Payment Processing Software on genuine finance tasks with the people who will actually use it rather than on a scripted scenario.